A docker image for running Glimmer.
Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses
The Docker image built by the Dockerfile is designed to be used by docker-pipeline.
Glimmer binaries are installed in /opt, as well as ELPH. The image's default command, glimmer.sh, is modeled after run_glimmer.py from YoderLab/MMAP.
| Variable | Description | Type | Required? |
|---|---|---|---|
| CONT_INPUT_CONTIGS_FILE | FASTA file containing contigs | Input | Yes |
| CONT_OUTPUT_ORFS_FILE | Results file, to contain ORFs | Output | Yes |
docker pull dukegcb/glimmer