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Last pushed: 5 months ago
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makeblastdb-go

A docker image for building an NCBI BLAST+ database, from Gene Ontology sequences at http://archive.geneontology.org

Running

blast+ is installed via apt-get, which provides makeblastdb. The image's default command, makeblastdb-go.sh, downloads the sequence and builds

Environment Variables

Variable Description Type Required? Default
BLASTDB Output directory for creating the go-seqdb database Output No /go-blastdb

Notes

  1. The output directory defaults to /go-blastdb, which is marked as docker volume in the Dockerfile
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dukegcb
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