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Last pushed: 2 years ago
Short Description
Step2 for hictool (GITAR), a HiC data analysis tool
Full Description

Arguments : bam1, bam2, RE_bed, outdir
The two input bam files represent two mates of the same sample and they're prepared by the first step of hictool.
The output files will go to the specified output directory as well. RE_bed is the bed file describing the restriction enzyme sites.

Run examples
docker run -v /inputdir/:/data/:rw duplexa/hictool-bam2hdf5 /data/input.R1.bam /data/input.R2.bam /data/HindIII_hg19.bed /data/

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