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This Docker container is part of the genome assembler comparison project (currently internal to Joint Genome Institute). It installs and executes the Meraculous2 genome assembler on a specified Illumina shotgun dataset that must meet the following characteristics:

genome size: appx. 0.5-1 mb
read length: 100-300 bp
library type: paired-end, 270 +/-30 bp

The results is the file final.scaffolds.fa containing all scaffolds over 1kb in size.

For more questions please contact:

Michael Barton
Eugene Goltsman

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