Short Description
Run cutadapt (http://cutadapt.readthedocs.org/en/stable/), which removes adapter sequences.
Full Description
Software
cutadapt (https://cutadapt.readthedocs.org/en/stable/)
Run
docker run -it --rm -v ${DATA_DIR}:/data emihat/cutadapt:latest cutadapt -f fastq -a ADAPTER_SEQ [-a ADAPTER_SEQ2 .. ] -o /data/${OUTPUT.fastq} /data/${INPUT.fastq}
Dockerfile
FROM python
MAINTAINER emihat <hattori.emi@imsbio.co.jp>
RUN pip install cutadapt
CMD /usr/local/bin/cutadapt
Docker Pull Command
Owner
emihat