Public | Automated Build

Last pushed: 2 years ago
Short Description
A bundle of GFF v3 validators used by FlyBase.
Full Description

FlyBase GFF 3 validation


This image builds a container that is used to validate GFF v3 files.

It currently contains two GFF validators


This command will fetch the current image, create a container named gff-validator,
mount the /local/path/to/your/gff/files on your machine to /data in the container,
and execute an interactive bash shell.

 > docker run -i -t -v /local/path/to/your/gff/files:/data --name gff-validator flybase/gff-validator /bin/bash


This will run the Genome Tools GFF validator on whichever file you specify.

# gt gff3validator /data/path/to/your/file.gff > validation.log 2>&1 
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