Public | Automated Build

Last pushed: a year ago
Short Description
Docker for Affymetrix HGU133A and HGU133Plus2 Microarrays
Full Description

BUILD

FROM jupyter/minimal-notebook

R-Base

version 3.3.1

R-packages

r-base=3.3.1 1
r-irkernel=0.7
r-plyr=1.8
r-devtools=1.11
r-dplyr=0.4
r-ggplot2=2.1
r-tidyr=0.5
r-shiny=0.13
r-rmarkdown=0.9
r-forecast=7.1
r-stringr=1.0
r-rsqlite=1.0
r-reshape2=1.4
r-nycflights13=0.2
r-caret=6.0
r-rcurl=1.95
r-crayon=1.3
r-randomforest=4.6

Bioconductor packages

annotate
limma
affy
GEOquery
SVGAnnotation
affxparser
simpleaffy
hgu133a.db
hgu133a2.db
hgu133plus2.db
hugene10sttranscriptcluster.db
oligo
frma
hgu133afrmavecs
hgu133plus2frmavecs
hgu133plus2cdr
hgu133acdf
hugene10stv1cdf
arrayQualityMetrics
genefilter
pathifier

Installation

The image is built automatically by the docker automated build system. To get
the latest version just pull it in docker.

docker pull fmunoz/jupyter_r_microarrays
Docker Pull Command
Owner
fmunoz
Source Repository