fnndsc/pl-xfm

By fnndsc

Updated over 2 years ago

MNI Xfm Transformations

Image
Data Science
Integration & Delivery

3.2K

MNI Xfm Transformations

VersionMIT Licenseci

pl-xfm is a ChRISds plugin which takes in .obj and .mnc files from an input directory, applies the linear transformation specified by its arguments, and writes the results to an output directory.

Installation

pl-xfm is a ChRIS plugin, meaning it can run from either within ChRIS or the command-line.

Get it from chrisstore.co

Local Usage

To get started with local command-line usage, use Apptainer (a.k.a. Singularity) to run pl-xfm as a container.

To print its available options, run:

singularity exec docker://fnndsc/pl-xfm cxfm --help

Examples

To scale every object inside a directory named incoming/ to be larger by a factor of 2, run

singularity exec docker://fnndsc/pl-xfm cxfm --scale 2.0 incoming/ outgoing/
Sample Data

Docker Pull Command

docker pull fnndsc/pl-xfm