fnndsc/pl-xfm repository overview

⁠MNI Xfm Transformations

pl-xfm is a ChRIS⁠ ds plugin which takes in .obj and .mnc files from an input directory, applies the linear transformation specified by its arguments, and writes the results to an output directory.

⁠Installation

pl-xfm is a ChRIS⁠ plugin, meaning it can run from either within ChRIS or the command-line.

⁠Local Usage

To get started with local command-line usage, use Apptainer⁠ (a.k.a. Singularity) to run pl-xfm as a container.

To print its available options, run:

singularity exec docker://fnndsc/pl-xfm cxfm --help

⁠Examples

To scale every object inside a directory named incoming/ to be larger by a factor of 2, run

singularity exec docker://fnndsc/pl-xfm cxfm --scale 2.0 incoming/ outgoing/

⁠Sample Data

• https://github.com/aces/surface-extraction/tree/97a1ebe08c716e651531eddda949d8fa6ce8f0f1/models⁠
• https://github.com/aces/CIVET_Full_Project/blob/master/Test/mni_icbm_00100_t1.mnc⁠