genomehubs/goat
Open source bundled web server to run an instance of the Genomes on a Tree (GoaT) UI
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An open-source bundled web server to run a GoaT-specific instance of the GenomeHubs UI, as used at goat.genomehubs.org.
GoaT UI has been published in: Challis et al. 2023, Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life. Wellcome Open Research, 8:24 doi:10.12688/wellcomeopenres.18658.1
This container is updated using an automated build from github.com/genomehubs/genomehubs and pulls in GoaT-specific configuration files from github.com/genomehubs/goat-ui
All underlying code is freely available under an MIT license.
The goat.genomehubs.org website is freely available with no logins or restrictions, and is being widely used by the academic community and especially by the Earth BioGenome Project to plan and coordinate efforts to sequence all described eukaryotic species.
docker pull genomehubs/goat:latest
docker run -d --restart always \
--net net-es -p 8880:8880 \
--user $UID:$GROUPS \
-e GH_CLIENT_PORT=8880 \
-e GH_API_URL=https://goat.genomehubs.org/api/v2 \
-e GH_SUGGESTED_TERM=Canidae \
--name goat-ui \
genomehubs/goat:latest
docker pull genomehubs/goat