genomehubs/goat repository overview

⁠Genomes on a Tree (GoaT) UI

An open-source bundled web server to run a GoaT-specific instance of the GenomeHubs UI, as used at goat.genomehubs.org⁠.

⁠About

GoaT UI has been published in: Challis et al. 2023, Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life. Wellcome Open Research, 8:24 doi:10.12688/wellcomeopenres.18658.1⁠

This container is updated using an automated build from github.com/genomehubs/genomehubs⁠ and pulls in GoaT-specific configuration files from github.com/genomehubs/goat-ui⁠

All underlying code is freely available under an MIT license.

The goat.genomehubs.org⁠ website is freely available with no logins or restrictions, and is being widely used by the academic community and especially by the Earth BioGenome Project⁠ to plan and coordinate efforts to sequence all described eukaryotic species.

⁠Usage

docker pull genomehubs/goat:latest

docker run -d --restart always \
    --net net-es -p 8880:8880 \
    --user $UID:$GROUPS \
    -e GH_CLIENT_PORT=8880 \
    -e GH_API_URL=https://goat.genomehubs.org/api/v2 \
    -e GH_SUGGESTED_TERM=Canidae \
    --name goat-ui \
    genomehubs/goat:latest