genomehubs/goat

Sponsored OSS

By genomehubs

Updated 16 days ago

Open source bundled web server to run an instance of the Genomes on a Tree (GoaT) UI

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Genomes on a Tree (GoaT) UI

An open-source bundled web server to run a GoaT-specific instance of the GenomeHubs UI, as used at goat.genomehubs.org.

About

GoaT UI has been published in: Challis et al. 2023, Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life. Wellcome Open Research, 8:24 doi:10.12688/wellcomeopenres.18658.1

This container is updated using an automated build from github.com/genomehubs/genomehubs and pulls in GoaT-specific configuration files from github.com/genomehubs/goat-ui

All underlying code is freely available under an MIT license.

The goat.genomehubs.org website is freely available with no logins or restrictions, and is being widely used by the academic community and especially by the Earth BioGenome Project to plan and coordinate efforts to sequence all described eukaryotic species.

Usage

docker pull genomehubs/goat:latest

docker run -d --restart always \
    --net net-es -p 8880:8880 \
    --user $UID:$GROUPS \
    -e GH_CLIENT_PORT=8880 \
    -e GH_API_URL=https://goat.genomehubs.org/api/v2 \
    -e GH_SUGGESTED_TERM=Canidae \
    --name goat-ui \
    genomehubs/goat:latest

Docker Pull Command

docker pull genomehubs/goat