genomehubs/sequenceserver
Customisable image to run the SequenceServer BLAST server
680
Sets up an SequenceServer BLAST server with support for various customisations. Uses the latest master
branch which comes with one or two bugs (e.g. it may be necessary to manually refresh the results page after running a search) but a great user interface and result visualisation.
docker run -d \
--name genomehubs-sequenceserver \
-v ~/demo/genomehubs-mirror/blast/conf:/conf \
-v ~/demo/genomehubs-mirror/blast/data:/dbs \
-p 8083:4567 \
genomehubs/sequenceserver:latest
Files in a directory mounted to /conf
will be used as follows:
sequenceserver.conf
overwrites the standard SequenceServer configuration optionsMasthead.html
is added as a masthead on every pagecustom.css
can be applied to the Masthead or any other page elementlinks.rb
specifies how to parse the sequence IDs to generate links back to the Ensembl
site, and the base url for that site.docker pull genomehubs/sequenceserver