genomehubs/sequenceserver

Sponsored OSS

By genomehubs

Updated over 5 years ago

Customisable image to run the SequenceServer BLAST server

Image
Data Science
Databases & Storage
Web Servers

680

View on Github

Sets up an SequenceServer BLAST server with support for various customisations. Uses the latest master branch which comes with one or two bugs (e.g. it may be necessary to manually refresh the results page after running a search) but a great user interface and result visualisation.

docker run -d \
           --name genomehubs-sequenceserver \
           -v ~/demo/genomehubs-mirror/blast/conf:/conf \
           -v ~/demo/genomehubs-mirror/blast/data:/dbs \
           -p 8083:4567 \
           genomehubs/sequenceserver:latest

Files in a directory mounted to /conf will be used as follows:

  • sequenceserver.conf overwrites the standard SequenceServer configuration options
  • Masthead.html is added as a masthead on every page
  • custom.css can be applied to the Masthead or any other page element
  • links.rb specifies how to parse the sequence IDs to generate links back to the Ensembl site, and the base url for that site.

Docker Pull Command

docker pull genomehubs/sequenceserver