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There are several different ways to install AIM-HII:
- [[docker_install_aimhii.org][Docker]]: recommended for a standard desktop
- [[pip_install_aimhii.org][Pip]]: recommended for a bioinformatics server
- [[git_install_aimhii.org][Git]]: recommended for pros
The bioinformatics software that AIM-HII depends on is described in the [[software_dependencies.org][Software Dependencies]] section.
For details about the input files to AIM-HII, and options see [[running_aimhii.org][Running AIMHII]]. There are some differences specific to running from Docker that are discussed in /Quick Start to analyze your own data/ section of the [[docker_install_aimhii.org][Docker Installation Instructions]].
Note that in the instructions, text that has ~this formatting~ should be typed at the command line.