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#+TITLE:AIM-HII
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There are several different ways to install AIM-HII:

  1. [[docker_install_aimhii.org][Docker]]: recommended for a standard desktop
  2. [[pip_install_aimhii.org][Pip]]: recommended for a bioinformatics server
  3. [[git_install_aimhii.org][Git]]: recommended for pros

The bioinformatics software that AIM-HII depends on is described in the [[software_dependencies.org][Software Dependencies]] section.

For details about the input files to AIM-HII, and options see [[running_aimhii.org][Running AIMHII]]. There are some differences specific to running from Docker that are discussed in /Quick Start to analyze your own data/ section of the [[docker_install_aimhii.org][Docker Installation Instructions]].

Note that in the instructions, text that has ~this formatting~ should be typed at the command line.

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granek
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