Public | Automated Build

Last pushed: 6 months ago
Short Description
automated build for template-nf
Full Description

Name

Empty template for nextflow pipelines (short description)

Description

...

Dependencies

  1. This pipeline is based on nextflow. As we have several nextflow pipelines, we have centralized the common information in the IARC-nf repository. Please read it carefully as it contains essential information for the installation, basic usage and configuration of nextflow and our pipelines.
  2. External software:
  • ...
  • ...

You can avoid installing all the external software by only installing Docker. See the IARC-nf repository for more information.

Input

Type Description
input1 ......
input2 ......

Specify the test files location

Parameters

  • Mandatory

    | Name | Example value | Description |
    |-----------|---------------|-----------------|
    | --param1 | xx | ...... |
    | --param2 | xx | ...... |

  • Optional

    | Name | Default value | Description |
    |-----------|---------------|-----------------|
    | --param3 | xx | ...... |
    | --param4 | xx | ...... |

  • Flags

Flags are special parameters without value.

Name Description
--help Display help
--flag2 ....

Usage

  ...

Output

Type Description
output1 ......
output2 ......

Detailed description (optional section)

...

Directed Acyclic Graph

Contributions

Name Email Description
contrib1* xx Developer to contact for support (link to specific gitter chatroom)
contrib2 xx Developer
contrib3 xx Tester

References (optional)

FAQ (optional)

Docker Pull Command
Owner
iarcbioinfo
Source Repository