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Last pushed: 5 months ago
Short Description
R with packages for ChIP-seq analysis
Full Description

This Docker was built using the r-base docker image as the base.
I also installed:
Python, Numpy, MACS2 and sratoolkit

Additionally, I installed the following R packages:

c("SRAdb", "Biostrings", "rtracklayer", "R.utils", "Rsubread",
"BiocParallel", "Rsamtools", "ChIPQC", "DiffBind",
"soGGi", "GenomicAlignments", "GenomicRanges", "tracktables",
"BSgenome.Mmusculus.UCSC.mm10", "TxDb.Mmusculus.UCSC.mm10.knownGene",
"org.Mm.eg.db", "GenomeInfoDb", "ChIPseeker", "rGREAT", "ChIPpeakAnno", "MotifDb", "seqLogo", "tools")

For instruction on how to use please see:
https://hub.docker.com/_/r-base/

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Owner
inesdesantiago

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