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Last pushed: 3 months ago
Short Description
Intel GenomicsDB utility for combining multiple VCF files into a single VCF file.
Full Description

A usage example:

docker run -it -v $HOME/docker/data/:/data/ -v /data/variant_calling/reference/:/ref/ vcf_combiner combine_vcf -R /ref/Homo_sapiens_assembly19.fasta -o /data/output/combined_vcf.gz -i /data/tn.list

where:
1) reference file Homo_sapiens.fasta is resided at host directory '/data/variant_calling/reference/'.
2) $HOME/docker/data/tn.list is a VCF file list.
3) the combined VCF file will saved at $HOME/docker/data/output/combined_vcf.gz

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Owner
intelhlsgenomicsdb

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