Public Repository

Last pushed: 3 years ago
Short Description
CellCognition enables analysis of phenotypes in time-lapse fluorescence microscopy images
Full Description

CellCognition is an image analysis platform designed primarily for the analysis of cellular phenotypes from images acquired by high-throughput time-lapse fluorescence microscopy.

More info on the project's website

The graphical user interface is made available from the container via X11 socket sharing. For this to work, root must be given access to the user's X server e.g. with xhost +local:root.
The Docker image can then be used with the following command:
docker run --rm -t -i -e DISPLAY=$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix:ro cellcognition:1.5.0

The battery package isn't included in the docker image so on launch, cellcognition will complain about having no settings file. This can be safely dismissed.

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