FROM rocker/hadleyverse:latest
MAINTAINER Jon Zelner [email protected]

## Mostly pirated from jrnold/docker-stan

# Install clang to use as compiler
# clang seems to be more memory efficient with the templates than g++
# with g++ rstan cannot compile on docker hub due to memory issues
RUN apt-get update \ 
	&& apt-get install -y --no-install-recommends \
                   clang-3.6 


RUN ln -s /usr/bin/clang++-3.6 /usr/bin/clang++ \
    && ln -s /usr/bin/clang-3.6 /usr/bin/clang

# Global site-wide config
RUN mkdir -p $HOME/.R/ \
    && echo "\nCXX=clang++ -ftemplate-depth-256\n" >> $HOME/.R/Makevars \
    && echo "CC=clang\n" >> $HOME/.R/Makevars

# Install rstan
RUN install2.r --error \
    inline \
    RcppEigen \
    StanHeaders \
    rstan \
    KernSmooth

# Config for rstudio user
RUN mkdir -p /home/rstudio/.R/ \
    && echo "\nCXX=clang++ -ftemplate-depth-256\n" >> /home/rstudio/.R/Makevars \
    && echo "CC=clang\n" >> /home/rstudio/.R/Makevars \
    && echo "CXXFLAGS=-O3\n" >> /home/rstudio/.R/Makevars \
    && echo "\nrstan::rstan_options(auto_write = TRUE)" >> /home/rstudio/.Rprofile \
    && echo "options(mc.cores = parallel::detectCores())" >> /home/rstudio/.Rprofile

RUN apt-get update \ 
	&& apt-get install -y --no-install-recommends \
                   curl 

RUN apt-get update \ 
 	&& apt-get install -t unstable -y --no-install-recommends \
                   texlive-xetex \
                   texlive-fonts-extra

USER rstudio