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Last pushed: 7 months ago
Short Description
This repo provides Ballgown R package as a Shiny framework for differential expression analysis
Full Description


This repo provides RNA seq differential expression package Ballgown as a Shiny framework for interactive data analysis and visualization


To run container use the commands below:

Pull the image
$ docker pull kapeel/ballgown_shinyapp

Run a container
$ docker run --rm -p 3838:3838 kapeel/ballgown_shinyapp

After that check with your browser at addresses plus the port 3838

Test data:

Full path to your Ballgown directory

Design Matrix file :
Create a txt file for the experiment design for the test data and upload it to shiny app
ID group reps
IS20351_DS1.sorted DS 1
IS20351_DS2.sorted DS 2
IS20351_DS3.sorted DS 3
IS20351_WW1.sorted WW 1
IS20351_WW2.sorted WW 2
IS20351_WW3.sorted WW 3

Name of the covariate of interest for the differential expression tests;correspond column name of design matrix file
Set the value for this as "group"

Click submit

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