Docker container for epidemic modelling and forward-time simulations using nxsim and contagion Python packages.
This container is based on kentwait/miniconda-mpi which means it can run MPI applications natively and through Python using Jupyter notebook.
docker pull kentwait/docker-contagion
The following command runs the container which launches a Jupyter notebook running Python 3.5 and IPython 4.1.1.
docker run -d -p <port>:8888 -v <directory>:/home/docker/notebooks kentwait/docker-contagion
<port> with 8888 (default) or any unused port on the host machine.
<directory> with the directory where notebooks will be stored on the host machine.