Public Repository

Last pushed: 2 years ago
Short Description
lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.
Full Description

What's in this image?


lobSTR 3.0.3 Precompiled Binaries

Please see the lobSTR documentation for details.

$  docker run -i -t ubuntu:14.04 /bin/bash

# apt-get update

# apt-get install wget

# cd /opt

# wget http://files.teamerlich.org/lobSTR/lobSTR-bin-Linux-x86_64-3.0.3.tar.gz

# tar -xzf lobSTR-bin-Linux-x86_64-3.0.3.tar.gz

# cd lobSTR-bin-Linux-x86_64-3.0.3

# sudo cp bin/lobSTR bin/allelotype bin/lobSTRIndex /usr/local/bin

# /opt/lobSTR-bin-Linux-x86_64-3.0.3/bin/lobSTR --help

# lobSTR --help

# exit

Note: The external libraries are not required, because we are using the precompiled binaries.

How to use this image?


$ docker pull luzhang/lobstr-3.0.3

$ docker run luzhang/lobstr-3.0.3 lobSTR --help

Some other basic tools are also available, such as:

$ docker run luzhang/lobstr-3.0.3 tar --help

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Owner
luzhang