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Last pushed: 10 months ago
Short Description
APRICOT - A tool for sequence-based identification and characterization of protein classes.
Full Description

APRICOT is a computational pipeline for the identification of specific functional classes of interest in large protein sets. The pipeline uses efficient sequence-based algorithms and predictive models like signature motifs of protein families for the characterization of user-provided query proteins with specific functional features. The dynamic framework of APRICOT allows the identification of unexplored functional classes of interest in the large protein sets or the entire proteome.

This image is an extended version (includes complete filesystem and databases) of malvikasharan/apricot, which is a docker image comprising of of APRICOT software and required tools (but no database).

Source code

The source codes of APRICOT are available via git https://github.com/malvikasharan/APRICOT and pypi https://pypi.python.org/pypi/bio-apricot.

Contact

For question, troubleshooting and requests, please feel free to contact Malvika Sharan at malvika.sharan@uni-wuerzburg.de

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Owner
malvikasharan

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