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Last pushed: a day ago
Short Description
Receive files and ingest them in a tactic instance
Full Description

README

The goal of this project is to lunch a service that has a DICOM receiver that can receive data and subsequently ingest them to a pre-specified tactic instance.

Limitations

This example is mostly aimed at BRAIN MRI scans, and I will be using dcm2nii for the conversions.

Warning

DICOM contains personal information...

How to deploy

A docker receive-ingest instance than can be deployed based om a docker file provided in this repository:

To deploy follow the steps be executing the commands:

docker build . -t receive ( This will take some time)

docker images (Will list all the images select the most recent one), docker ps will give information for the ones running or docker ps -a will show the ones stopped.

docker run -d --name receive -p 10070:80 -p 10071:22 -p 8832:8832 -p 5000:5000 receive

docker receive-ingest is up and running, you can visit localhost:8832 and start setting up the project details or ssh to your docker by ssh root@localhost -p 10081 or shell access.
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Use of store scp

storescp -v --fork --accept-all --promiscuous --sort-conc-studies STD 8832   -od /tmp  -xcs '/bin/bash main.sh'

Command i want to use

find /temp -type d -print0 | xargs -n 1 --max-procs 1 -0 ./UCSF.py --db dataingested.db --t UCSF.config

Option to execute command

-xcs '/bin/bash ${HOME}/.dcm2mov/dcm2mov.sh

How to send data

storescu +sd +sp *.dcm -v +r 0.0.0.0 8832 /media/pan0s/STORE01/stage1/0a0c32c9e08cc2ea76a71649de56be6d/

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Owner
mayoqin
Source Repository

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