The HGI Monster
The HGI implementation of Cookie Monster.
Build the Docker image from this repository, using the tag
Ensure your Cookie Monster
setup.confis specified per
Ensure your iRODS environment configuration file
Kerberos authentication disabled by removing the appropriate iRODS
authentication scheme line. Your
~/.irodsdirectory will ultimately
be bind mounted into the Docker container.
Start the Docker container in interactive mode, with the
docker run -it \ -v /path/to/your/.irods:/root/.irods \ --entrypoint=/bin/bash \ wtsi-hgi/the-monster
...When at the shell prompt, run
iinitand enter your iRODS
password. This will create the
.irodsAfile in the bind mount,
which will be reciprocated on the host. Note that the ownership of
the host's iRODS configuration will change to
Now you can run the container. To avoid having to rebuild the image
when changes need to be made to the rules, enrichment loaders or
notification receivers, they can also be bind mounted:
docker run -d \ -p 50666:5000 \ -v /path/to/your/setup:/root/.cookie-monster \ -v /path/to/your/.irods:/root/.irods \ -v /path/to/your/rules:/cookie-monster/hgicookiemonster/rules \ -v /path/to/your/enrichment_loaders:/cookie-monster/hgicookiemonster/enrichment_loaders \ -v /path/to/your/notification_receivers:/cookie-monster/hgicookiemonster/notification_receivers \ wtsi-hgi/the-monster
Copyright (c) 2016 Genome Research Ltd.
This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details.
You should have received a copy of the GNU General Public License along
with this program. If not, see http://www.gnu.org/licenses/.