Public | Automated Build

Last pushed: a year ago
Short Description
HGI Cookie Monster
Full Description

The HGI Monster

The HGI implementation of Cookie Monster.

Containerised Setup

  1. Build the Docker image from this repository, using the tag
    wtsi-hgi/the-monster.

  2. Ensure your Cookie Monster setup.conf is specified per
    setup.example.conf.

  3. Ensure your iRODS environment configuration file
    (~/.irods/.irodsEnv or ~/.irods/irods_environment.json) has
    Kerberos authentication disabled by removing the appropriate iRODS
    authentication scheme line. Your ~/.irods directory will ultimately
    be bind mounted into the Docker container.

  4. Start the Docker container in interactive mode, with the ~/.irods
    bind mount:

    docker run -it \
               -v /path/to/your/.irods:/root/.irods \
               --entrypoint=/bin/bash \
               wtsi-hgi/the-monster
    

    ...When at the shell prompt, run iinit and enter your iRODS
    password. This will create the .irodsA file in the bind mount,
    which will be reciprocated on the host. Note that the ownership of
    the host's iRODS configuration will change to root.

  5. Now you can run the container. To avoid having to rebuild the image
    when changes need to be made to the rules, enrichment loaders or
    notification receivers, they can also be bind mounted:

    docker run -d \
               -p 50666:5000 \
               -v /path/to/your/setup:/root/.cookie-monster \
               -v /path/to/your/.irods:/root/.irods \
               -v /path/to/your/rules:/cookie-monster/hgicookiemonster/rules \
               -v /path/to/your/enrichment_loaders:/cookie-monster/hgicookiemonster/enrichment_loaders \
               -v /path/to/your/notification_receivers:/cookie-monster/hgicookiemonster/notification_receivers \
               wtsi-hgi/the-monster
    

License

Copyright (c) 2016 Genome Research Ltd.

This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.

This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details.

You should have received a copy of the GNU General Public License along
with this program. If not, see http://www.gnu.org/licenses/.

Docker Pull Command
Owner
mercury
Source Repository

Comments (0)