This is a Docker image containing all required software for a Jupyter notebook using Python, R and bash to integrate RNAseq and eCLIP
data from ENCODE.
It uses an RNAseq data set of KHSRP-shRNA on K562 cells and respective shRNA-mock control. It uses as well an eCLIP data set on KHSRP.
Notebooks can be found in: https://github.com/mpg-age-bioinformatics/ENCODE_RNAseq_eCLIP.