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Last pushed: a year ago
Short Description
Integration of RNAseq and eCLIP data from ENCODE. An example with KHSRP.
Full Description

ENCODE_RNAseq_eCLIP

This is a Docker image containing all required software for a Jupyter notebook using Python, R and bash to integrate RNAseq and eCLIP
data from ENCODE.

It uses an RNAseq data set of KHSRP-shRNA on K562 cells and respective shRNA-mock control. It uses as well an eCLIP data set on KHSRP.

Notebooks can be found in: https://github.com/mpg-age-bioinformatics/ENCODE_RNAseq_eCLIP.

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Owner
mpgagebioinformatics

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