Public Repository

Last pushed: 2 years ago
Short Description
Wrapper for the NFsim, a stochastic biochemical reaction network simulator.
Full Description

To run NFsim in a container, you can just do this: docker run msneddon/nfsim -help

To pass in files to NFsim, you need to mount a directory from your host machine to the container. You can, for instance, just mount the current directory to a /work directory in the container, for example:

git clone
cd nfsim/test/simple_system
docker run msneddon/nfsim
docker run -v `pwd`:/work msneddon/nfsim -xml simple_system.xml
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