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Last pushed: 18 days ago
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Neuroscience data analysis with Python

What it gives you

  • shell environment with Neo (development version) and Elephant installed.
  • IPython, scipy, matplotlib and OpenMPI are also installed.
  • use directly or as a base for your own project-specific Docker images.

More analysis tools will be added in future releases, coming soon!

Basic use

The following command starts a container with the bash shell, running as user docker.

docker run -i -t neuralensemble/analysis /bin/bash

You should then activate the "neurosci" virtual environment:

source ~/env/neurosci/bin/activate

after which you can run ....

Note that this image does not provide an X11 graphical environment, so GUI tools will not work;
use the neuralensemble/analysisx image if you need X11.

Documentation

For documentation of the tools installed in the image, see http://neuralensemble.org/projects/

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neuralensemble

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