Biological neuronal network simulations with Python
What it gives you
- shell environment with NEST 2.12, NEURON 7.4, and PyNN 0.9 installed.
- The Python 2.7 version provides Brian 1.4, the Python 3.4 version provides Brian 2 (release candidate)
- IPython, scipy, matplotlib and OpenMPI are also installed.
- use directly or as a base for your own project-specific Docker images.
The following command starts a container with the bash shell, running as user
in a Python virtual environment named "neurosci".
docker run -i -t neuralensemble/simulation:py2 /bin/bash
after which you can run simulations with Python and MPI.
Note that this image does not provide an X11 graphical environment, so GUI tools will not work;
neuralensemble/simulationx:py2 image if you need X11.
For documentation of the simulation tools installed in the image, see http://neuralensemble.org/projects/