Biological neuronal network simulations with Python
What it gives you
- shell environment with NEST 2.14, NEURON 7.5, and PyNN 0.9 installed.
- The Python 2.7 version provides Brian 1.4, the Python 3.4 version provides Brian 2.
- IPython, scipy, matplotlib and OpenMPI are also installed.
- use directly or as a base for your own project-specific Docker images.
The following command starts a container with the bash shell, running as user
in a Python virtual environment named "neurosci"
docker run -i -t neuralensemble/simulation /bin/bash
after which you can run simulations with Python and MPI. This will use Python 3.4 as the Python version; if you'd prefer Python 2.7 use:
docker run -i -t neuralensemble/simulation:py2 /bin/bash
Note that this image does not provide an X11 graphical environment, so GUI tools will not work;
neuralensemble/simulationx image if you need X11.
More information on the various images which have been released can be found at: https://hub.docker.com/r/neuralensemble/
Documentation for simulators
For documentation of the simulation tools installed in the image, see http://neuralensemble.org/projects/