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Synaptograms in Docker

Usage

TOKEN : The ndstore token for your dataset of interest.
INPUT : The name of the csv file of locations with columns x, y, z.
OUTPUTPY: A name for the hdf5 output file.
OUTPUTR : A name for the RData output file.
BF : An integer to use as buffer around each location

Given a csv file of locations in (x,y,z) column order

docker run -v data:/home/meda/data -t neurodata/synaptograms $TOKEN1 $INPUT $OUTPUT $BF

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neurodata

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