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Last pushed: 4 days ago
Short Description
Genome annotation and comparison pipeline
Full Description

funannotate is a pipeline for genome annotation (built specifically for fungi, but theoretically should work with other eukaryotes). It requires only a few simple commands to go from genome assembly all the way to a functional annotated genome (InterPro, PFAM, MEROPS, CAZymes, GO ontology, etc) that is ready for submission to NCBI. Moreover, funannotate incorporates a light-weight comparative genomics package that can get you started looking at differences between funannotated genomes.

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