pegi3s/seqtk
seqtk (https://github.com/lh3/seqtk) Docker image.
18
This image allows the usage of seqtk, a fast and lightweight tool for processing sequences in the FASTA or FASTQ format.
To show the available commands, just run: docker run --rm pegi3s/seqtk
.
To obtain the help of a command, you just need to run: docker run --rm pegi3s/seqtk <seqtk-command>
(e.g. docker run --rm pegi3s/seqtk split
)
To run an application, you should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/seqtk <seqtk-command> <options>
In this command, you should replace:
/your/data/dir
to point to the directory that contains the input files you want to analyze. <seqtk-command>
to the name of the seqtk
application you want to use.<options>
with the specific options of the seqtk
command. These options will include the input/output files, which should be referenced under /data/
.Please note that data must be under the same drive than the Docker Toolbox installation (usually C:
) and in a folder with write permissions (e.g. C:/Users/User_name/
).
As in the Linux case, to run an application, you should adapt and run the following command: docker run --rm -v "/c/Users/User_name/dir/":/data pegi3s/seqtk <seqtk-command> <options>
docker pull pegi3s/seqtk