pegi3s/sppider
Automatically submit data to SPPIDER Web Server (http://sppider.cchmc.org/) docker image.
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This image facilitates the usage of SPPIDER (Solvent accessibility based Protein-Protein Interface iDEntification and Recognition) Prediction Server, a protein interface recognition server.
You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/sppider bash -c "/opt/run"
In this command, you should replace:
/your/data/dir
to point to the directory that contains the input PDB files you want to analyze.In order to be notified of the results you need to create a file called parameters.sppider
filled with the following information:
-F EMail="your_mail_address"
which must be in the same folder as the input data.
Don't forget to keep a delay between requests for at least 15 seconds or your IP address will be banned, so do not run this image multiple times.
For additional information please access SPPIDER
manual here.
For Developers: To see Formfind
information, just run: cat ./opt/info
.
docker pull pegi3s/sppider