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Last pushed: 6 months ago
Short Description
RStudio environment with EMOTE packages installed
Full Description

EMOTE is a biological protocol that rely on next generation sequencing to detect 5' ends of transcripts on a global scale. This docker image provides necessary software to analyze sequencing data generated with EMOTE protocol. The image inherits bioconductor/release_core which contains an R installation, core Bioconductor packages, and Rstudio server for the UI. Additionaly, it installs the following R packages:

  • roxygen2
  • VGAM
  • ShortRead
  • Rbowtie
  • EMOTE

To run the image use:

docker run -d -p 8787:8787 -v $(pwd):/export \
           -e USER=$USER -e PASSWORD=EMOTE \
           pradosj/docker-emote
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pradosj
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