Public | Automated Build

Last pushed: 14 days ago
Short Description
EBI Tools in a container (Perl)
Full Description

How to use

  1. Clone this repository
  2. Build the image with docker build -t image_name .
  3. Run the container with docker run image_name ncbiblast_lwp.pl --email docker@ebi.ac.uk --stype protein --database uniprotkb_swissprot --program blastp sp:wap_rat
  4. Alternatively, to save results it can be run as docker run --rm -w /results -v /path/local/destination:/results image_name ncbiblast_lwp.pl --email docker@ebi.ac.uk --stype protein --database uniprotkb_swissprot --program blastp sp:wap_rat

How to update clients

  1. Add the jdispatcher clients' repo as a remote: git remote add -f -t master --no-tags clients git@github.com:ebi-wp/webservice-clients.git
  2. Load the remote repo's master branch: git checkout clients/master
  3. Remove everything from the branch except the folder with perl clients: git subtree split -P perl/lwp -b perl_clients
  4. Go back to master branch: git checkout master
  5. Insert the modified branch into master: git subtree add --squash -P clients perl_clients
  6. Clean up the branch: git branch -D perl_clients
Docker Pull Command
Owner
psafont
Source Repository

Comments (0)