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Python Systems Biology modeling framework
PySB (pronounced "Pie Ess Bee") is a framework for building rule-based
mathematical models of biochemical systems. It works nicely with
scientific Python libraries such as NumPy, SciPy and SymPy for model
simulation and analysis.
PySB depends on the following:
For full instructions, see the Installation chapter of the manual at
The manual is available online at http://docs.pysb.org/. You can also
generate the documentation locally by installing Sphinx and running
the following commands::
$ cd doc $ make html
Then open _build/html/index.html in your web browser.