Public Repository

Last pushed: 3 months ago
Short Description
Docker image of the extra-cellular RNA processing toolkit (exceRpt)
Full Description

The exceRpt small-RNAseq pipeline has been developed to support the analysis needs of the Extracellular RNA Communication Consortium, an NIH CommonFund initiative in the USA.

Analysis of extracellular RNAs by smallRNA-sequencing typically requires more care than for typical cellular samples due to the high potential for biological and experimental noise and contamination. exceRpt has been designed to operate efficiently and reliably with such datasets, providing support for modern library preps (such as BiooScientific's random barcoded adapters), alignment to a variety of RNA biotypes, as well as comprehensive alignment and quantification of exogenous nucleic acid sequences.

exceRpt is made available via this Docker Image but also:

Docker Pull Command