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Last pushed: 4 months ago
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## Emacs, make this -*- mode: sh; -*- ## start with the Docker 'base R' Debian-based image FROM r-base:latest ## This handle reaches Carl and Dirk MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" rocker-maintainers@eddelbuettel.com ## Remain current RUN apt-get update -qq \ && apt-get dist-upgrade -y ## From the Build-Depends of the Debian R package, plus subversion, and clang-3.8 ## Compiler flags from https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt ## ## Also add git autotools-dev automake so that we can build littler from source ## RUN apt-get update -qq \ && apt-get install -t unstable -y --no-install-recommends \ automake \ autotools-dev \ bash-completion \ bison \ clang-4.0 \ llvm-4.0 \ libc++-dev \ libc++abi-dev \ debhelper \ default-jdk \ gfortran \ git \ groff-base \ libblas-dev \ libbz2-dev \ libcairo2-dev \ libcurl4-openssl-dev \ libjpeg-dev \ liblapack-dev \ liblzma-dev \ libncurses5-dev \ libpango1.0-dev \ libpcre3-dev \ libpng-dev \ libreadline-dev \ libssl-dev \ libtiff5-dev \ libx11-dev \ libxml2-dev \ libxt-dev \ mpack \ subversion \ tcl8.6-dev \ texinfo \ texlive-base \ texlive-extra-utils \ texlive-fonts-extra \ texlive-fonts-recommended \ texlive-generic-recommended \ texlive-latex-base \ texlive-latex-extra \ texlive-latex-recommended \ tk8.6-dev \ valgrind \ x11proto-core-dev \ xauth \ xdg-utils \ xfonts-base \ xvfb \ zlib1g-dev \ && rm -rf /var/lib/apt/lists/* ## Add symlink and check out R-devel RUN ln -s $(which llvm-symbolizer-4.0) /usr/local/bin/llvm-symbolizer \ && cd /tmp \ && svn co https://svn.r-project.org/R/trunk R-devel ## Build and install according extending the standard 'recipe' I emailed/posted years ago ## Leak detection does not work at build time, see https://github.com/google/sanitizers/issues/764 and the fact that we cannot add privileges during build (e.g. https://unix.stackexchange.com/q/329816/19205) RUN cd /tmp/R-devel \ && R_PAPERSIZE=letter \ R_BATCHSAVE="--no-save --no-restore" \ R_BROWSER=xdg-open \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ LIBnn=lib \ AWK=/usr/bin/awk \ CC="clang-4.0 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-omit-frame-pointer -fsanitize-address-use-after-scope" \ CXX="clang++-4.0 -stdlib=libc++ -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-omit-frame-pointer -fsanitize-address-use-after-scope" \ CFLAGS="-g -O3 -Wall -pedantic -mtune=native" \ FFLAGS="-g -O2 -mtune=native" \ FCFLAGS="-g -O2 -mtune=native" \ CXXFLAGS="-g -O3 -Wall -pedantic -mtune=native" \ MAIN_LD="clang++-4.0 -stdlib=libc++ -fsanitize=undefined,address" \ FC="gfortran" \ F77="gfortran" \ ASAN_OPTIONS=detect_leaks=0 \ ./configure --enable-R-shlib \ --without-blas \ --without-lapack \ --with-readline \ --without-recommended-packages \ --program-suffix=dev \ --disable-openmp \ && ASAN_OPTIONS=detect_leaks=0 make \ && ASAN_OPTIONS=detect_leaks=0 make install \ && ASAN_OPTIONS=detect_leaks=0 make clean ## Set Renviron to get libs from base R install RUN echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron ## Set default CRAN repo RUN echo 'options("repos"="http://cran.rstudio.com")' >> /usr/local/lib/R/etc/Rprofile.site ## to also build littler against RD ## 1) apt-get install git autotools-dev automake ## 2) use CC from RD CMD config CC, ie same as R ## 3) use PATH to include RD's bin, ie ## ie ## CC="clang-3.5 -fsanitize=undefined -fno-sanitize=float-divide-by-zero,vptr,function -fno-sanitize-recover" \ ## PATH="/usr/local/lib/R/bin/:$PATH" \ ## ./bootstrap ## Create R-devel symlinks RUN cd /usr/local/bin \ && mv R Rdevel \ && mv Rscript Rscriptdevel \ && ln -s Rdevel RD \ && ln -s Rscriptdevel RDscript ## Install littler RUN ASAN_OPTIONS=detect_leaks=0 R --slave -e "install.packages('littler')" \ && ASAN_OPTIONS=detect_leaks=0 RD --slave -e "install.packages('littler')"
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