Public | Automated Build

Last pushed: 2 months ago
Dockerfile
## Start with the rstudio image providing 'base R' as well as RStudio based on Debian testing FROM rocker/geospatial:3.4.0 MAINTAINER Carl Boettiger cboettig@ropensci.org ## Refresh package list and upgrade RUN apt-get update \ && apt-get install -y --no-install-recommends \ cdbs \ icedtea-netx \ libapparmor-dev \ libgsl0-dev \ libhiredis-dev \ libleptonica-dev \ libmpfr-dev \ libpoppler-cpp-dev \ libprotobuf-dev \ librdf0-dev \ libsasl2-dev \ libtesseract-dev \ libwebp-dev \ libxslt1-dev \ mdbtools \ protobuf-compiler \ python-pip \ python-pdftools \ tesseract-ocr-eng \ && R CMD javareconf \ && apt-get clean \ && rm -rf /var/lib/apt/lists/ \ && rm -rf /tmp/downloaded_packages/ /tmp/*.rds \ && wget -O /usr/local/bin/install2.r https://github.com/eddelbuettel/littler/raw/master/inst/examples/install2.r \ && chmod +x /usr/local/bin/install2.r \ && R CMD javareconf -e ## Install additional dependencies RUN install2.r --error \ -r 'http://cran.rstudio.com' \ -r 'http://datacube.wu.ac.at' \ -r 'http://packages.ropensci.org' \ -r 'http://www.bioconductor.org/packages/release/bioc' \ -r 'http://nceas.github.io/drat' \ aws.s3 \ dismo \ drat \ geiger \ git2r \ knitcitations \ pander \ phylobase \ phytools \ Rcampdf \ redland \ rJava \ rhdf5 \ ropkgs \ ridigbio \ rgeolocate \ RJSONIO \ sangerseqR \ dataone \ datapack \ listviewer \ getPass \ dbplyr \ GGally \ Rserve \ RSclient \ Cairo \ dendextend \ IRdisplay \ outliers \ cranlogs \ akima \ mapdata \ plot3D \ memisc \ rapport \ RcppRedis \ mongolite \ countrycode \ redux \ rcdk \ MCMCglmm \ storr \ purrrlyr \ corrplot \ protolite \ tidytext \ janeaustenr \ wordcloud2 \ webp \ openair \ snow \ tmap \ forecast \ weathermetrics \ rnaturalearthhires \ rsvg \ clipr \ tiff \ sys \ Rmpfr \ plotKML \ readtext \ cld3 \ seqinr \ jose \ && R -e "remotes::install_github('richfitz/drat.builder')" \ && pip install retriever \ && install2.r --error \ -r 'http://cran.rstudio.com' \ -r 'http://packages.ropensci.org' \ -r 'http://www.omegahat.net/R' \ Rcompression \ RHTMLForms \ ROOXML \ RWordXML \ SSOAP \ # Sxslt \ XMLSchema \ rrdflibs \ rrdf \ && rm -rf /tmp/downloaded_packages/ /tmp/*.rds ## Install the rOpenSci R packages that are currently on CRAN. must use single quote notation RUN R -e 'out <- ropkgs::ro_pkgs(); readr::write_lines(out$packages$name[out$packages$on_cran], "ropensci.txt")' \ && install2.r `cat ropensci.txt`
Source Repository