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FROM rocker/rstudio:latest RUN apt-get update -qq && apt-get -y --no-install-recommends install \ libxml2-dev \ libcairo2-dev \ libsqlite3-dev \ libmariadbd-dev \ libmariadb-client-lgpl-dev \ libpq-dev \ libssh2-1-dev \ unixodbc-dev \ && R -e "source('https://bioconductor.org/biocLite.R')" \ && install2.r --error \ --deps TRUE \ tidyverse \ dplyr \ ggplot2 \ devtools \ formatR \ remotes \ selectr \ caTools # not clear why selectr needs explicit re-install, see https://github.com/rocker-org/rocker-versioned/pull/63 ## Notes: Above install2.r uses --deps TRUE to get Suggests dependencies as well, ## dplyr and ggplot are already part of tidyverse, but listed explicitly to get their (many) suggested dependencies. ## In addition to the the title 'tidyverse' packages, devtools is included for package development. ## RStudio wants formatR for rmarkdown, even though it's not suggested. ## remotes included for installation from heterogenous sources including git/svn, local, url, and specific cran versions
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