Public | Automated Build

Last pushed: a year ago
Short Description
Docker images containing speck benchmark data and scripts.
Full Description

Benchmark scripts for Speck annotation checker

gal_test.pl -- GAL/Bioperl variant

gffutils_test.py -- gffutils/Biopython variant

specs directory

  • contains use cases

Usage

docker run -v /tmp:/mnt/out satta/speck-benchmarks /opt/scripts/run_performance_checks.sh /opt/genomes /mnt/out /opt/scripts
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Owner
satta
Source Repository