Public Repository

Last pushed: 6 months ago
Short Description
This docker provides a full environment for the bioinformatics 10-week rotation
Full Description

Introduction

This docker provides a full environment for the bioinformatics 10-week rotation for genetics, informatics and genetic counselling STPs.

Specs

  • Ubuntu 14.04

Bioinformatic Tools Provided

  • bwa 0.7.15
  • samtools 1.3.1
  • bcftools 1.3.1
  • htslib 1.3.1
  • picard tools 2.5.0
  • sambamba 0.6.3
  • GATK 3.6
  • bamUtil 1.0.13
  • bedtools 2.25.0
  • snpEff Latest
  • freebayes
  • vt
  • fastqc 0.11.5
  • ensembl-vep
Docker Pull Command
Owner
sdgsbinfx

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