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Short Description
evaluator for kobe benchmark
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FedBench Experiments

FedBench experiments for SemaGrow stack, FedX and SPLENDID. To run the experiment, follow the instructions below.

Datasets

In order to run the experiments you will need the following datasets.
For each dataset you could use either the public endpoints, or you can set up your own (by using the pre populated virtuoso databases)

Dataset Endpoint
ChEBI http://143.233.226.25:8890/sparql
Dbpedia http://143.233.226.25:8891/sparql
DrugBank http://143.233.226.25:8892/sparql
GeoNames http://143.233.226.25:8893/sparql
jamendo http://143.233.226.25:8894/sparql
KEGG http://143.233.226.25:8895/sparql
LinkedMDB http://143.233.226.25:8896/sparql
NYT http://143.233.226.25:8897/sparql
SP2Bench http://143.233.226.25:8898/sparql
SWDF http://143.233.226.25:8899/sparql

Configuration

Our current configuration uses the live endpoints, so if you want to use our public datasets skip this part.

If you want to use your own endpoints, you should rename the endpoints inside the configuration/metadata files, i.e.

  • for SemaGrow:
    • ./suites/semagrow-reactive/lifeScience/lifeScience.void.n3
    • ./suites/semagrow-reactive/crossDomain/crossDomain.void.n3
  • for SemaGrow-HiBISCuS:
    • ./suites/semagrow-hibiscus/lifeScience/lifeScience.void.n3
    • ./suites/semagrow-hibiscus/crossDomain/crossDomain.void.n3
    • ./suites/semagrow-hibiscus/lifeScience/summaries/lifeScience.void.n3
    • ./suites/semagrow-hibiscus/crossDomain/summaries/crossDomain.void.n3
  • for SemaGrow-TBSS:
    • ./suites/semagrow-tbss/lifeScience/lifeScience.void.n3
    • ./suites/semagrow-tbss/crossDomain/crossDomain.void.n3
    • ./suites/semagrow-tbss/lifeScience/summaries/lifeScience.void.n3
    • ./suites/semagrow-tbss/crossDomain/summaries/crossDomain.void.n3
  • for SPLENDID:
    • ./suites/SPLENDID/lifeScience-config_SPLENDID.n3
    • ./suites/SPLENDID/crossDomain-config_SPLENDID.n3
  • for FedX:
    • ./doc/fedx/LifeScience-FedX-SPARQL.ttl
    • ./doc/fedx/CrossDomain-FedX-SPARQL.ttl
  • for FedX-HiBiSCuS:
    • ./doc/fedx-hibiscus/summaries/crossDomain.n3
    • ./doc/fedx-hibiscus/summaries/lifeScience.n3

Running the Experiment

In order to run one experiment you should execute:

sh runEval.sh ./suites/semagrow-reactive/lifeScience/lifeScience-config.prop

The ".prop" files are the entry points for the configuration for each experiment.

  • ./suites/semagrow-reactive/crossDomain/crossDomain-config.prop
  • ./suites/semagrow-reactive/lifeScience/lifeScience-config.prop
  • ./suites/semagrow-hibiscus/crossDomain/crossDomain-config.prop
  • ./suites/semagrow-hibiscus/lifeScience/lifeScience-config.prop
  • ./suites/semagrow-tbss/crossDomain/crossDomain-config.prop
  • ./suites/semagrow-tbss/lifeScience/lifeScience-config.prop
  • ./suites/SPLENDID/crossDomain-config.prop
  • ./suites/SPLENDID/lifeScience-config.prop
  • ./doc/fedx/CrossDomain-FedX-SPARQL.prop
  • ./doc/fedx/LifeScience-FedX-SPARQL.prop
  • ./doc/fedx-hibiscus/CrossDomain-FedX-SPARQL.prop
  • ./doc/fedx-hibiscus/LifeScience-FedX-SPARQL.prop

In order to switch between the three versions of SemaGrow you have to point the semagrow symbolic link to the corresponding semagrow directory.

  • For Semagrow with default source selection, the semagrow symlink should point to semagrow-reactive directory.
  • For Semagrow with HiBiSCUS source selection, the semagrow symlink should point to semagrow-hibiscus directory.
  • For Semagrow with TBSS source selection, the semagrow symlink should point to semagrow-tbss directory.

Viewing the results

In order to view the results (total query processing time and number of results for each query), you should open the result/result.csv file in the directory of the .prop file. In order to view the optimization time you should check the .log files or the prints during the evaluation of the experiment.

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