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Last pushed: 2 years ago
Short Description
A pipeline to generate FASTA with epitopes from VCF-file
Full Description

Runs Ensembl Variant Effect Predictor (VEP) on a server with all necessary soft installed."
It uses cache + Ensembl server for VCF annotation by VEP, generates FASTA-file with wild type and mutated peptides (and sends results to e-mail).
Input: VCF-file from rnaseq-pipeline_serge2.sh.
Output: FASTA-file with wild type and mutated epitopes (peptides) of specified length.

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Owner
serge2016