Public Repository

Last pushed: a year ago
Short Description
ngs alignment and variant calling tool set
Full Description

Bioconda/conda/r Tools etc :-

java-jdk
nextflow
parallel
awscli
samtools
biobambam
bcftools
bamtools
bamutil
sambamba
samblaster
bioawk
vcftools
vt
vcflib
vawk
cramtools
chanjo
rtg-tools
pysamstats
pysam
bcbio-variation
bcbio-variation-recall
fastqc
trimmomatic
skewer
cutadapt
trim-galore
seqtk
glia
bwa
snap-aligner
novoalign
bowtie
bowtie2
bbmap
mosaik
khmer
freebayes
platypus-variant
varscan
vardict
vardict-java
cnvkit
scalpel
delly
lumpy-sv
wham
manta
metasv
pindel
svtools
svtyper
lofreq

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Owner
snewhouse