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Last pushed: 2 years ago
Short Description
docker image of a workflow for data analysis of 16S data of BioPool
Full Description

This workflow will trim paired-end data with Trimmomatic, assemble them into complete amplicon sequences with SeqPrep, detect and remove seqs of PCR chimera, remove short seqs and map the seqs to reference genomes. This workflow will output quality plot of reads, composition barcharts, and summary table including PCR chimera rate, error rates etc. Figures are generated with R, and the sample data will be compared side-by-side with some controls (good runs and poor runs)

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