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staphb

StaPH-B

Sponsored OSS

Community Organization

State Public Health Bioinformatics Community

Displaying 1 to 30 of 266 repositories

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FastQC: A quality control analysis tool for high throughput sequencing data

3d

1M+

2

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Freyja: recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset

4d

100K+

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Plotting tool for long read sequencing data and alignments

7d

10K+

1

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Software package for assigning SARS-CoV-2 genome sequences to global lineages

9d

1M+

4

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polypolish: a tool for polishing genome assemblies with short reads

10d

10K+

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Viral Annotation DefineR: classification and annotation of viral sequences

11d

1M+

2

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NCBI Datasets: easily gather data from across NCBI databases

15d

10K+

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Fast genome and metagenome distance estimation using MinHash http://mash.readthedocs.org

17d

50K+

3