Public | Automated Build

Last pushed: 2 years ago
Short Description
Short description is empty for this repo.
Full Description

SGA Docker Container

Docker virtualization of a full SGA pipeline – using a modified .dot-verbose version of SGA to enable comparison / evaluation of the single steps in the scaffolding algorithm.


  1. Install Docker
  2. Pull automated build of this image: docker pull stpf/sga
  3. Navigate to files and run pipeline docker run -v $(pwd):/input READ_1.fq READ_2.fq (replace filenames accordingly).
Docker Pull Command
Source Repository