Public Repository

Last pushed: a year ago
Short Description
Python tools for pre-processing data for Paradigm jobs.
Full Description
  • commonColumnOrder.py processes matrix data files so that columns appear in the same order. Only columns that are common across all data files are kept.
  • commonRowOrder.py processes matrix data files so that rows appear in the same order. Only rows that are common across all data files are kept.

Usage

Run the tools with something like:

docker run -it -v `pwd`/data:/data stuartlab/paradigm-tools-python python ./tools/commonColumnOrder.py -v data/matrix1.tab data/matrix2.tab

The output will be written to the host data directory in this example.

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Owner
stuartlab

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