How to use
To run, simply mount the local directory containing .mcd files (for example "~/mea_recordings") to the container's /data directory.
docker run -v ~/mea_recordings:/data tbenst/mcd
The image will recursively look for .mcd files and convert the electrical channels to .raw. The analog channels will be processed separately into a .analog channel. This design choice makes it easy to run spike sorting software like Spyking Circus on the .raw file, while retaining the analog channels for analysis.
The executable file packaged here is identical to this download link.