This docker runs abricate tools to find resistant genes and virulent factors for contigs fasta files.
Please refer https://github.com/tseemann/abricate for usage.
To run this docker:
Assuming you have a folder of fasta files named data, the command to run docker based abricate:
cd path/to/data directory
docker run --rm -it -v $(pwd):/data/ thanhleviet/abricate abricate *.fa > res_results.tab