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piq-docker

Dockerfile for PIQ

Example run string:

Use the '-v' directive to expose host directories to inside docker, for example if you keep all your scripts on /cluster then have:

docker run -u $(id -u) -v /cluster/:/cluster/ -w /cluster/thashim/basepiq/ -i thashim/piq /cluster/thashim/basepiq/bam2rdata.r /cluster/thashim/basepiq/common.r /cluster/thashim/PIQ/bams/k562rep1.RData /cluster/projects/wordfinder/bams/wgEncodeOpenChromDnaseK562AlnRep1V2.bam

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thashim
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