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Last pushed: 4 months ago
Short Description
Ubuntu with sshd via supervisor
Full Description

A Data Science core based on Docker containers

Here you can find a set of containers to help creating a data science core architecture, for example:

  • LDAP server
  • PostgreSQL server
  • NFS server (Not active)
  • Samba server (for integration with sequencer technology like Illumina)
  • Galaxy server
  • Zabbix server
  • Software server (i.e. a lot of pre-installed software)
  • Interative Compute server (a place for users to login)
  • Exploratory Analysis server (JupyterHub with JupyterLab)
  • SLURM grid configuration

There is a focus on bioinformatics, but the infrastructure can be used for
other applications.

Installation

Please check the project documentation_.

Acknowledgements

The sequencer Samba file configuration was originally inspired on David Personette's Samba container_.
It is currently completely different.

The current Galaxy configuration is based on Björn Grüning's Galaxy container_.

Author and License

Copyright by Tiago Antao. Licensed under GNU Affero General Public License
version 3.

.. _project documentation: http://virtual-core.rtfd.io/
.. _Galaxy container: https://github.com/bgruening/docker-galaxy-stable
.. _Samba container: https://github.com/dperson/samba

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tiagoantao
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